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A. AAVs expressing Cre-On jRCaMP1b and Cre-Off <t>GCaMP6s</t> were injected into the DLS to assess direct (dSPN, red) and indirect (iSPN, green) pathway activity via multicolor photometry (see Methods). Top, sagittal schematic of injection site. Middle and bottom, histological verification of jRCaMP1b (dSPN, red) and GCaMP6s (iSPN, green) expression (sagittal sections, SNr = substantia nigra pars reticulata, GP = globus pallidus). Scale bar, 1 mm.
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A. AAVs expressing Cre-On jRCaMP1b and Cre-Off <t>GCaMP6s</t> were injected into the DLS to assess direct (dSPN, red) and indirect (iSPN, green) pathway activity via multicolor photometry (see Methods). Top, sagittal schematic of injection site. Middle and bottom, histological verification of jRCaMP1b (dSPN, red) and GCaMP6s (iSPN, green) expression (sagittal sections, SNr = substantia nigra pars reticulata, GP = globus pallidus). Scale bar, 1 mm.
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A. AAVs expressing Cre-On jRCaMP1b and Cre-Off <t>GCaMP6s</t> were injected into the DLS to assess direct (dSPN, red) and indirect (iSPN, green) pathway activity via multicolor photometry (see Methods). Top, sagittal schematic of injection site. Middle and bottom, histological verification of jRCaMP1b (dSPN, red) and GCaMP6s (iSPN, green) expression (sagittal sections, SNr = substantia nigra pars reticulata, GP = globus pallidus). Scale bar, 1 mm.
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Key Resources Table

Journal: Cell

Article Title: The striatum organizes 3D behavior via moment-to-moment action selection

doi: 10.1016/j.cell.2018.04.019

Figure Lengend Snippet: Key Resources Table

Article Snippet: ​ REAGENT or RESOURCE SOURCE IDENTIFIER Chicken Anti-GFAP abcam Cat# ab4674 Alexa Fluor 488, Donkey Anti-Chicken IgY Jackson Laboratory Cat# 703-545-155 Rabbit Anti-NeuN abcam Cat# ab104225 Alex Fluor 555, Donkey Anti-Rabbit IgG Thermo-Fisher Cat# A-31572 Bacterial and Virus Strains AAV9-CBA-do(Fas)-GCaMP6s UNC Vector Core N/A AAV9-CBA-DIO-jRCaMP1b UNC Vector Core N/A AAV1.Syn.Flex.GCaMP6f.WPRE.SV40 Penn Vector Core Cat# AV-1-PV2819 AAV1.EF1α.DIO.GCaMP6s.P2A.NLS.dTomato Addgene Cat# 51082 Chemicals, Peptides, and Recombinant Proteins N-Methyl-D-aspartic acid Sigma-Aldrich Cat# M3262-250MG Experimental Models: Organisms/Strains Mouse: B6.FVB(Cg)-Tg(Drd1-cre)EY262Gsat/Mmucd MMRRC-UCD MMRRC Stock# 030989-UCD Mouse: B6.FVB(Cg)-Tg(Adora2a-cre) KG139Gsat/Mmucd MMRRC-UCD MMRRC Stock# 036158-UCD Mouse: C57BL/6J Jackson Laboratory Jax stock #000664 Mouse: B6;129S-Pdyn tm1.1(cre)Mjkr /LowlJ Jackson Laboratory Jax stock #027958 Recombinant DNA pAAV-CBA-DIO-jRCaMP1b This paper Addgene ID 110134 pAAV-CBA-do(Fas)-GCaMP6s This paper Addgene ID 110135 Software and Algorithms MoSeq ( Wiltschko et al., 2015 ) N/A MATLAB The MathWorks https://www.mathworks.com/products/matlab.html Constrained Non-negative Matrix Factorization for microendoscope data (CNMF-E) ( Zhou et al., 2018 ) N/A Mosaic version 1.2.0 Inscopix https://www.inscopix.com Intan Recording System Software Intan Technologies http://intantech.com/downloads.html Other Kinect for Xbox One (Kinect 2) Microsoft https://www.xbox.com/en-US/xboxone/accessories/kinect Xbox One S Kinect Adapter Microsoft https://www.xbox.com/en-US/xboxone/accessories/kinect/kinect-adapter Shallow tank US Plastic Cat# 14317 Open in a separate window Key Resources Table

Techniques: Plasmid Preparation, Recombinant, Software

A. AAVs expressing Cre-On jRCaMP1b and Cre-Off GCaMP6s were injected into the DLS to assess direct (dSPN, red) and indirect (iSPN, green) pathway activity via multicolor photometry (see Methods). Top, sagittal schematic of injection site. Middle and bottom, histological verification of jRCaMP1b (dSPN, red) and GCaMP6s (iSPN, green) expression (sagittal sections, SNr = substantia nigra pars reticulata, GP = globus pallidus). Scale bar, 1 mm.

Journal: Cell

Article Title: The striatum organizes 3D behavior via moment-to-moment action selection

doi: 10.1016/j.cell.2018.04.019

Figure Lengend Snippet: A. AAVs expressing Cre-On jRCaMP1b and Cre-Off GCaMP6s were injected into the DLS to assess direct (dSPN, red) and indirect (iSPN, green) pathway activity via multicolor photometry (see Methods). Top, sagittal schematic of injection site. Middle and bottom, histological verification of jRCaMP1b (dSPN, red) and GCaMP6s (iSPN, green) expression (sagittal sections, SNr = substantia nigra pars reticulata, GP = globus pallidus). Scale bar, 1 mm.

Article Snippet: ​ REAGENT or RESOURCE SOURCE IDENTIFIER Chicken Anti-GFAP abcam Cat# ab4674 Alexa Fluor 488, Donkey Anti-Chicken IgY Jackson Laboratory Cat# 703-545-155 Rabbit Anti-NeuN abcam Cat# ab104225 Alex Fluor 555, Donkey Anti-Rabbit IgG Thermo-Fisher Cat# A-31572 Bacterial and Virus Strains AAV9-CBA-do(Fas)-GCaMP6s UNC Vector Core N/A AAV9-CBA-DIO-jRCaMP1b UNC Vector Core N/A AAV1.Syn.Flex.GCaMP6f.WPRE.SV40 Penn Vector Core Cat# AV-1-PV2819 AAV1.EF1α.DIO.GCaMP6s.P2A.NLS.dTomato Addgene Cat# 51082 Chemicals, Peptides, and Recombinant Proteins N-Methyl-D-aspartic acid Sigma-Aldrich Cat# M3262-250MG Experimental Models: Organisms/Strains Mouse: B6.FVB(Cg)-Tg(Drd1-cre)EY262Gsat/Mmucd MMRRC-UCD MMRRC Stock# 030989-UCD Mouse: B6.FVB(Cg)-Tg(Adora2a-cre) KG139Gsat/Mmucd MMRRC-UCD MMRRC Stock# 036158-UCD Mouse: C57BL/6J Jackson Laboratory Jax stock #000664 Mouse: B6;129S-Pdyn tm1.1(cre)Mjkr /LowlJ Jackson Laboratory Jax stock #027958 Recombinant DNA pAAV-CBA-DIO-jRCaMP1b This paper Addgene ID 110134 pAAV-CBA-do(Fas)-GCaMP6s This paper Addgene ID 110135 Software and Algorithms MoSeq ( Wiltschko et al., 2015 ) N/A MATLAB The MathWorks https://www.mathworks.com/products/matlab.html Constrained Non-negative Matrix Factorization for microendoscope data (CNMF-E) ( Zhou et al., 2018 ) N/A Mosaic version 1.2.0 Inscopix https://www.inscopix.com Intan Recording System Software Intan Technologies http://intantech.com/downloads.html Other Kinect for Xbox One (Kinect 2) Microsoft https://www.xbox.com/en-US/xboxone/accessories/kinect Xbox One S Kinect Adapter Microsoft https://www.xbox.com/en-US/xboxone/accessories/kinect/kinect-adapter Shallow tank US Plastic Cat# 14317 Open in a separate window Key Resources Table

Techniques: Expressing, Injection, Activity Assay

Key Resources Table

Journal: Cell

Article Title: The striatum organizes 3D behavior via moment-to-moment action selection

doi: 10.1016/j.cell.2018.04.019

Figure Lengend Snippet: Key Resources Table

Article Snippet: ​ REAGENT or RESOURCE SOURCE IDENTIFIER Chicken Anti-GFAP abcam Cat# ab4674 Alexa Fluor 488, Donkey Anti-Chicken IgY Jackson Laboratory Cat# 703-545-155 Rabbit Anti-NeuN abcam Cat# ab104225 Alex Fluor 555, Donkey Anti-Rabbit IgG Thermo-Fisher Cat# A-31572 Bacterial and Virus Strains AAV9-CBA-do(Fas)-GCaMP6s UNC Vector Core N/A AAV9-CBA-DIO-jRCaMP1b UNC Vector Core N/A AAV1.Syn.Flex.GCaMP6f.WPRE.SV40 Penn Vector Core Cat# AV-1-PV2819 AAV1.EF1α.DIO.GCaMP6s.P2A.NLS.dTomato Addgene Cat# 51082 Chemicals, Peptides, and Recombinant Proteins N-Methyl-D-aspartic acid Sigma-Aldrich Cat# M3262-250MG Experimental Models: Organisms/Strains Mouse: B6.FVB(Cg)-Tg(Drd1-cre)EY262Gsat/Mmucd MMRRC-UCD MMRRC Stock# 030989-UCD Mouse: B6.FVB(Cg)-Tg(Adora2a-cre) KG139Gsat/Mmucd MMRRC-UCD MMRRC Stock# 036158-UCD Mouse: C57BL/6J Jackson Laboratory Jax stock #000664 Mouse: B6;129S-Pdyn tm1.1(cre)Mjkr /LowlJ Jackson Laboratory Jax stock #027958 Recombinant DNA pAAV-CBA-DIO-jRCaMP1b This paper Addgene ID 110134 pAAV-CBA-do(Fas)-GCaMP6s This paper Addgene ID 110135 Software and Algorithms MoSeq ( Wiltschko et al., 2015 ) N/A MATLAB The MathWorks https://www.mathworks.com/products/matlab.html Constrained Non-negative Matrix Factorization for microendoscope data (CNMF-E) ( Zhou et al., 2018 ) N/A Mosaic version 1.2.0 Inscopix https://www.inscopix.com Intan Recording System Software Intan Technologies http://intantech.com/downloads.html Other Kinect for Xbox One (Kinect 2) Microsoft https://www.xbox.com/en-US/xboxone/accessories/kinect Xbox One S Kinect Adapter Microsoft https://www.xbox.com/en-US/xboxone/accessories/kinect/kinect-adapter Shallow tank US Plastic Cat# 14317 Open in a separate window Key Resources Table

Techniques: Plasmid Preparation, Recombinant, Software